Genome Assembly

The next stage of a study like this would involve genome assembly of your isolate with an assembler such as Shovill or SPAdes. However, we do not have time to conduct the assembly in this workshop, so you will be provided with a pre-assembled draft genome.

In 11  Assemble the ERR531380 Genome, you will assess the quality of this draft genome assembly of your study isolate ERR531380, visually inspecting the graph structure of the assembly, and estimating the level of completeness and contamination using the CheckM software.