Genome Assembly
BM425 Workshop 1: SARS-CoV-2 Genome Analysis
Preface to 2024-25 BM425 Workshop 1
1
Introduction
2
Register An Account with Galaxy
Galaxy
3
Join the Training Session
4
Download Workshop Data
5
Upload Data to Galaxy
Workshop
6
Inspect Read Quality
7
Clean Raw Read Data
Genome Assembly
8
Assemble the Genome
Genome Annotation
9
Annotate the Genome
10
Visualise the Annotation
Read Mapping
11
Map Reads to the Genome
12
Find Sequence Variants
Acknowledgements
References
Genome Assembly
When we have a cleaned input dataset of sequenced reads, we can begin to assemble the virus genome.
7
Clean Raw Read Data
8
Assemble the Genome